FastQCFastQC Report
Wed 8 May 2024
EGAF00007960967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492269
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25450.5169937574781268No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24540.4985079296075926No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19280.39165578169659276No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14870.3020706158624654No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11540.2344246743142469No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10860.2206110886527488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10180.20679750299125071No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10040.20395352947270698No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7740.15723110738234583No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7590.15418399289819185No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7580.15398085193258157No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5800.11782176005395424No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5620.11416522267296947No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5020.10197676473635349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)