FastQCFastQC Report
Wed 31 May 2023
EGAF00007960968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509832
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14760.2895071317610507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14450.28342669742189586No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11630.2281143592399065No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11070.21713034882078802No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11070.21713034882078802No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10830.21242291578402298No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10390.20379262188328703No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9820.19261246842097005No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7830.15358000282445983No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7400.14514585196692245No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6600.12945440851103893No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6140.12043182852390591No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6030.11827425504872192No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5430.10650567245680931No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCAT5160.10120981029044862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)