FastQCFastQC Report
Wed 8 May 2024
EGAF00007960969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509832
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27130.5321360761976494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19230.3771830720707998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15180.2977451395753895No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12230.23988294183181913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11480.2251722135919283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10760.21104991448163318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10530.20653862448806667No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8090.15867972194762195No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8080.1584835789044234No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7960.1561298623860409No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6390.12533540460386952No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6250.12258940199908991No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6090.1194511133079132No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5440.10670181550000785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)