FastQCFastQC Report
Wed 8 May 2024
EGAF00007960970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497089
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14550.29270412340647245No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14420.29008889756160366No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10900.21927662853130928No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10860.21847194365596503No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10810.2174660875617847No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10740.21605788902993228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10220.20559698565045695No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10050.20217707493024387No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7520.15128075656471981No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7290.14665381853149032No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6230.1253296693348676No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6020.12110507373931027No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5910.11889219033211357No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5390.10843128695263826No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCAT5000.1005856094180318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)