FastQCFastQC Report
Wed 8 May 2024
EGAF00007960971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497089
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25610.5151994914391588No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23640.47556876132845427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19240.38705342504058626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14580.29330763706298063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11860.23858906553957138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11370.22873167581660428No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10870.21867311487480107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9710.1953372534898177No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7690.1547006672849329No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7680.1544994960660968No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7600.1528901263154083No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6360.12794489517973642No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6080.12231210105232665No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5440.10943714304681859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)