FastQCFastQC Report
Wed 8 May 2024
EGAF00007960973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555317
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19920.3587140318052572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7570.13631853517900588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6920.12461350904078212No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.12425335439037521No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6760.12173227183752704No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5620.10120345676433462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)