FastQCFastQC Report
Wed 8 May 2024
EGAF00007960977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558973
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20080.35923023115606656No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7850.140436121243781No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7350.13149114536838094No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7170.12827095405323694No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7020.1255874612906169No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5990.10716081098729277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)