FastQCFastQC Report
Wed 8 May 2024
EGAF00007960979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543485
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24290.44693045806232No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20260.37277937753571855No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7200.13247835726836987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6990.12861440518137573No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6540.12033450785210262No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5790.10653467896998077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)