FastQCFastQC Report
Wed 8 May 2024
EGAF00007960981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520408
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18710.35952560298842445No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13500.2594118460899909No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9370.18005103687875668No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7790.14969024304007625No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7560.1452706338103949No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6950.13354906150558793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6890.1323961199674102No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6570.12624709843046225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6480.12451768612319564No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5930.1139490553565664No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5770.11087454458809241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5370.1031882676669075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)