FastQCFastQC Report
Wed 8 May 2024
EGAF00007960982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497354
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9910.19925445457360352No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8400.16889378591506252No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7840.15763420018739166No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6760.13591928485545507No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6730.1353160927629013No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5900.11862777820224629No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5710.11480756161607227No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4980.10012988736392991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)