FastQCFastQC Report
Wed 8 May 2024
EGAF00007960983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497354
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26340.5296026572622318No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17230.3464333251567294No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12520.2517321666257837No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9750.19603743007998328No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7350.1477820626756797No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7260.1459724863980183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6690.1345118366394962No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6410.12888204377566082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6030.12124161060331273No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5390.10837351262883178No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5230.10515648813521154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.1025426557341451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)