FastQCFastQC Report
Wed 8 May 2024
EGAF00007960985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522655
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18580.3554926289808765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14060.26901110675302065No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9870.18884350097100383No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7520.14388076264457433No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7450.14254144703485092No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7270.1390974926098478No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6670.1276176445265041No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6630.12685232132094787No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6130.11728578125149478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6050.11575513484038229No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5850.11192851881260105No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5550.10618859477092919No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5290.10121399393481359No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5270.10083133233203546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)