FastQCFastQC Report
Wed 8 May 2024
EGAF00007960987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506832
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23320.4601130157527543No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18880.3725100230451116No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12700.2505761277898791No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9420.18586040344729615No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7420.14639959592133092No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6890.13594248192695016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6500.12824762445938692No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6150.12134198314234301No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5970.11779051046500616No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5930.11700129431448685No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5740.11325251759952015No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5120.10101966726647094No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5080.10023045111595162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)