FastQCFastQC Report
Wed 8 May 2024
EGAF00007960988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533905
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11330.21221003736619812No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10950.2050926662983115No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10840.20303237467339694No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10830.20284507543476835No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9410.17624858354950787No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9200.17231529953830738No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9150.1713788033451644No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8620.16145194369784888No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC7930.14852829623247582No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.14103632668733201No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7470.13991253125556044No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6760.1266142853129302No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6630.12417939521075848No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5940.11125574774538541No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5760.1078843614500707No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5700.10676056601829913No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5660.10601136906378476No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5640.10563677058652757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)