FastQCFastQC Report
Wed 8 May 2024
EGAF00007960989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533905
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25050.4691845927646304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15070.2822599526132926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12860.24086682087637312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12630.23655893838791545No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12190.22831777188825728No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10800.20228317771888255No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10220.19141982187842407No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9970.1867373409127092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9960.1865500416740806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9610.17999456832207977No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG9160.17156610258379298No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8570.1605154475047059No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7830.14665530384618986No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7190.13466815257395978No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6860.12848727769921614No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6730.1260523875970444No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6420.12024611119955797No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6090.11406523632481434No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5840.10938275535909946No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5660.10601136906378476No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5490.10282728200709863No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.10001779342766971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)