FastQCFastQC Report
Wed 8 May 2024
EGAF00007960990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511650
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11870.2319945275090394No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10660.20834554871494185No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10530.2058047493403694No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9420.1841102316036353No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9160.1790286328544904No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8580.16769275872178246No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8390.16397928271279194No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8290.1620248216554285No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7670.14990716309977523No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC7180.14033030391869442No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6840.13368513632365875No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6800.13290335190071337No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6490.12684452262288676No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5950.1162904329131242No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5540.10827714257793414No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5480.10710446594351607No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5360.10475911267467995No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5140.10045929834848041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)