FastQCFastQC Report
Wed 8 May 2024
EGAF00007960991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511650
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26770.5232092250561908No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24860.48587901886054924No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15040.29395094302746017No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12450.24333040164174727No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12410.24254861721880192No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10950.2140134857812958No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.190755399198671No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9710.18977816866998926No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9440.184501123815108No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9380.1833284471806899No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9180.17941952506596306No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG8450.16515195934721No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8400.1641747288185283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8220.16065669891527412No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7110.13896218117854No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6500.12703996872862308No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5740.11218606469266101No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5690.11120883416397928No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5650.11042704974103391No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5600.1094498192123522No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.10534545099188898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)