FastQCFastQC Report
Wed 8 May 2024
EGAF00007960992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537383
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11900.22144355143352135No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11280.20990615631681686No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10850.2019044145423283No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10830.20153224050630555No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9720.1808765815070443No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9070.16878092533630576No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9020.16785049024624896No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8260.1537078768773854No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.14012352456255595No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC7460.1388209154364764No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7110.13230786980607873No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6760.12579482417568102No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6370.11853743047323789No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6300.11723482134715836No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6060.11276873291488566No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5690.10588351324846525No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5460.10160351183420391No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5410.1006730767441471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)