FastQCFastQC Report
Wed 8 May 2024
EGAF00007960993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537383
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25780.47973233243329244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15760.29327314038590724No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12910.24023834025266896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12660.2355861648023849No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11050.20562615490255554No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.20450963279448736No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10460.19464702083988514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9990.18590093099335112No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9930.18478440888528294No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9140.1700835344623853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9120.1697113604263626No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG8640.16077918356181717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7880.14663657019295362No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7720.14365917790477184No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6500.12095656170738561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6300.11723482134715836No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6170.11481569011301065No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6050.11258264589687429No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5900.10979134062670386No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.1081165574646016No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.10383655605034027No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5490.10216177288823801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)