FastQCFastQC Report
Wed 8 May 2024
EGAF00007960994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524263
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11970.22832051851837723No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10460.19951818076041988No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10180.19417734991788474No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9860.1880735432407017No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8900.16976212320915265No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8790.167663939663871No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8670.16537501215992736No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8290.15812674173077254No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7470.14248573712049104No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC7340.14000606565788545No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7020.13390225898070243No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7020.13390225898070243No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.1266539885515476No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5930.11311116748654779No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5510.10509992122274506No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5500.10490917726408311No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5480.10452768934675917No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5380.10262024976013948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)