FastQCFastQC Report
Wed 8 May 2024
EGAF00007960995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524263
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24730.47170980977105004No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24390.4652245151765431No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14640.279249155481123No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13230.25235425730978533No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11960.22812977455971525No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11880.22660382289041953No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10230.1951310697111946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.1899809828273214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9730.1855938717780961No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9290.17720113759696945No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9090.17338625842373007No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG8560.1632768286146457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.15965269340006827No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7880.15030623942563182No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7610.14515615254175862No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6690.12760770834485743No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5890.11234819165189991No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5880.11215744769323795No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5720.10910554435464644No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.10757959268535068No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5400.10300173767746341No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5380.10262024976013948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)