FastQCFastQC Report
Wed 8 May 2024
EGAF00007961005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517586
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34880.6738976711116607No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17560.3392672908463521No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9690.1872152647096328No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8520.16461032562704556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7610.14702870634058882No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6740.130219905484306No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6250.12075287971467545No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5920.11437712766574058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)