FastQCFastQC Report
Wed 8 May 2024
EGAF00007961007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496126
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31190.6286709424621971No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25920.5224479265347916No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16880.34023614968778093No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8590.1731415003446705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8240.16608684084285041No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7710.15540407074009424No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5960.12013077323099375No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5890.11871984133062971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)