FastQCFastQC Report
Wed 8 May 2024
EGAF00007961009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520115
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34650.6661988214144949No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18630.3581900156696115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9950.19130384626476837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8270.15900329734770197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7470.1436220835776703No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6230.1197812022341213No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6210.11939667188987052No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.11285965603760706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)