FastQCFastQC Report
Wed 8 May 2024
EGAF00007961011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506318
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35210.6954127643101766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23880.47164035250573755No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18010.35570530773150466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8930.17637137135160116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8080.15958350285788772No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.14694322540379762No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5740.11336748841637075No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5700.11257747107549011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)