FastQCFastQC Report
Wed 8 May 2024
EGAF00007961013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526253
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21300.4047482864705759No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9090.17273060676138663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8770.16664988133084277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7990.1518281130938921No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7350.13966666223280436No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7170.13624625417812344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6410.12180453128058177No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.11496371517121992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)