FastQCFastQC Report
Wed 8 May 2024
EGAF00007961015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505594
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25440.5031705281312674No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19160.378960193356725No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8860.17523942135389264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7950.15724079004102107No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6880.1360775642116006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6720.13291296969505176No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6580.1301439494930715No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.11372761543847434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)