FastQCFastQC Report
Wed 8 May 2024
EGAF00007961017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528699
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20970.39663400157745715No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9300.175903491400589No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8800.16644631444356808No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7630.14431652036413914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7620.1441273768249987No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7160.13542677402453948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6070.11481012825823389No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.10667695607519592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)