FastQCFastQC Report
Wed 8 May 2024
EGAF00007961020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565239
Total Bases24.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22980.4065536879090084No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22630.4003616169443368No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18610.3292412590072518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17840.31561870288497434No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16970.30022698362993355No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16600.2936810800387093No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC14730.26059772945603543No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12590.2227376384149006No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11090.196200191423451No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11080.19602327511017464No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10890.19266186515792433No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8640.1528556946707499No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8150.14418679532020967No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7830.1385254732953671No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7820.13834855698209075No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7490.13251031864397184No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7070.12507983348636595No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7030.12437216823326061No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6580.11641093413582573No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6130.10844970003839084No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5940.10508829008614055No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5870.10384987589320623No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.10349604326665357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)