FastQCFastQC Report
Wed 8 May 2024
EGAF00007961021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565239
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50880.9001502019499716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39880.7055422573460076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25910.4583901676989734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23660.4185839972117989No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16870.29845782049717023No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15590.27581253239779985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14950.2644898883481147No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11870.2099996638590048No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9520.16842433023906703No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9130.1615245940212901No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9010.15940159826197411No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8380.1482558705255653No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8260.1461328747662493No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7840.13870238960864342No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.13091807182448487No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7250.12826432712533992No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6910.12224917247394465No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6730.1190646788349707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6660.11782626464203638No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6500.1149956036296151No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6250.11057269579770682No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6230.11021886317115415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.10473445745958788No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5880.10402679220648256No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5770.10208071276044293No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5680.10048846594095595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)