FastQCFastQC Report
Wed 8 May 2024
EGAF00007961022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544206
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21940.4031561577784883No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21310.39157965917318077No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18190.334248427984991No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17810.3272657780325833No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16120.29621136113898044No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15610.28683990988706487No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC14490.26625946792207367No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11790.21664590247075557No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11070.20341561835040406No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10900.2002918012664322No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9900.1819164066548329No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9140.16795110675001745No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7850.1442468477010544No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7720.14185804640154648No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7240.13303785698797882No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7110.1306490556884709No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6640.12201262022101923No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6360.11686750972977145No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6000.1102523676695957No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5900.10841482820843576No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5690.10455599533999993No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5650.10382097955553594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)