FastQCFastQC Report
Wed 8 May 2024
EGAF00007961023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544206
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47100.8654810862063264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36910.6782358151141297No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26790.49227682164474484No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24960.4586498495055181No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23170.4257578931507554No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15670.28794243356376076No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA14960.2748959033895253No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13510.24825158120270635No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11610.2133383314406677No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9340.1716261856723373No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9030.16592981334274154No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8720.16023344101314577No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8690.15968217917479777No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8280.15214826738404208No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7600.13965299904815456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.12091009654432328No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6520.11980757286762732No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6390.11741877156811943No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6330.11631624789142346No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6030.11080362950794367No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5760.10584227296281189No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5750.10565851901669589No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5730.10529101112446389No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5720.1051072571783479No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5520.10143217825602806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)