FastQCFastQC Report
Wed 8 May 2024
EGAF00007961024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569689
Total Bases25 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22380.3928459211955997No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22250.3905639743790033No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18610.3266694635143034No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17850.31332885135573973No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17370.30490320157138373No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16540.29033384881926805No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC15200.26681224317127417No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11980.2102901758678858No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11700.20537521349367813No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10910.19150799822359219No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10240.17974719539959522No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9440.16570444575900184No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8360.14674673374420077No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7890.13849661833035218No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7670.134634862179189No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7550.1325284497331No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7450.1307731060280258No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7180.12603367802432555No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6380.11199092838373217No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6250.10970898156713577No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6060.10637382852749483No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6050.10619829415698741No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.10268760674683906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)