FastQCFastQC Report
Wed 8 May 2024
EGAF00007961025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569689
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49820.8745122338679525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39640.6958182446914019No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26050.45726703517182177No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23860.4188250080306975No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16620.2917381237833274No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15850.2782219772542563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14180.2489077373795176No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11540.20256666356555947No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10120.17764078295350622No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9320.16359803331291284No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9210.16166715523733124No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8850.15534791789906421No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8460.14850207744927496No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7850.13779448084832252No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.13656574025477058No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7480.13129970913954805No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6920.12146978439113272No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6780.11901230320402886No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6540.11479947831185085No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.1142728752003286No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6480.11374627208880636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6330.11111325653119508No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6270.1100600503081506No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5830.10233653800582423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)