FastQCFastQC Report
Wed 8 May 2024
EGAF00007961026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555533
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22040.39673610748596394No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21040.37873537665629226No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18000.32401315493409033No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17630.3173528845271118No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16310.2935919198319452No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15980.2876516786581535No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC15220.2739711232276031No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12250.22050895266347814No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10760.19368786372726732No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10670.19206779795259687No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10600.19080774679451987No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8950.1611065409255616No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8060.14508589048715376No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7710.1387856346967687No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7230.13014528389852628No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6900.12420504272473462No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6830.12294499156665761No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6500.11700475039286594No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6460.1162847211596791No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6110.10998446536929399No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5940.10692434112824979No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5620.10116410726275488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)