FastQCFastQC Report
Wed 8 May 2024
EGAF00007961027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555533
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47170.8490944732356134No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39580.7124689262384053No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25120.4521783584413527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24080.4334575983784942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23620.42517726219684515No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16180.29125182482408785No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15970.2874716713498568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14370.2586705020223821No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11360.20448830222507033No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9610.17298702327314489No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9310.1675868040242434No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9020.1623665920836386No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8820.15876644591770428No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7990.14382583932907675No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7420.1335654227561639No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7400.13320540813957046No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6960.12528508657451493No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.11898483078412983No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6350.1143046407684152No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6250.11250456768544803No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6090.10962445075270055No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5910.10638431920335965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5760.10368420957890889No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5730.10314418765401875No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5650.10170412918764501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)