FastQCFastQC Report
Wed 8 May 2024
EGAF00007961029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552129
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22870.41421479400647315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18410.3334365700769204No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15470.28018814443726014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11270.20411896495203113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10120.1832904991405994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10000.18111709401245No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9560.1731479418759022No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9250.16753331196151625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9000.16300538461120498No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.1459803777740347No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6770.12261627264642863No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6540.1184505794841423No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6310.11428488632185595No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5620.1017878068349969No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5550.10051998717690974No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5530.10015775298888485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)