FastQCFastQC Report
Wed 8 May 2024
EGAF00007961031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531458
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27250.5127404235141818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21740.40906336907149765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17180.32326166884306945No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14330.2696356062003018No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10360.19493544174704303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9590.1804469967523304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9560.1798825118824065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9040.17009810747039278No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8600.16181899604484268No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.15749127870875967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.13378291417195715No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5850.11007454963515462No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5790.10894557989530687No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5350.10066646846975677No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.10066646846975677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)