FastQCFastQC Report
Wed 8 May 2024
EGAF00007961033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556989
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22280.4000078996174072No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18350.3294499532306742No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15740.28259085906543935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10900.19569506758661304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10040.18025490629078852No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9800.17594602406869794No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9700.1741506564761602No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9200.16517381851347154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9070.1628398406431725No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7360.13213905481077723No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6680.11993055518152065No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6550.11759657731122158No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6130.11005603342256311No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6110.10969695990405556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)