FastQCFastQC Report
Wed 8 May 2024
EGAF00007961035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539449
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23280.4315514534274788No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23170.4295123357351668No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17260.3199561033573146No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14430.26749516636419757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11040.2046532665738559No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9320.1727688808395233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9180.17017364014021713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8950.1659100304199285No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8600.1594219286716631No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8560.15868043132900422No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7030.13031815797230137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6530.12104944118906515No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6230.1154882111191234No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5480.10158513594426906No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.10065826426594543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)