FastQCFastQC Report
Wed 8 May 2024
EGAF00007961037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551664
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41960.7606079062617825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10880.19722149714318862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7770.1408466022796485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6890.12489486354012587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.11800661272078655No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6230.11293105948548392No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5860.10622407842454827No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5810.10531772963252996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)