FastQCFastQC Report
Wed 8 May 2024
EGAF00007961038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529898
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18720.3532755360465599No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17940.3385557220446199No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7600.14342382873685125No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7270.13719621512064586No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5930.11190832952756946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)