FastQCFastQC Report
Wed 8 May 2024
EGAF00007961039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529898
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38920.7344809755839803No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26030.49122661342371554No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10040.18947042638394557No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7100.13398805053047944No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6380.12040052991330408No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6060.11436163186122612No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5390.10171768906468792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)