FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554515
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19550.3525603455271724No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18030.32514900408465053No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7590.13687636943996107No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7560.13633535612201653No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6730.12136732099221842No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5560.10026780159238254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)