FastQCFastQC Report
Wed 8 May 2024
EGAF00007961041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554515
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41710.7521888497155171No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10540.19007601237117122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.13417130285023848No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7210.1300235340793306No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6640.1197442810383849No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5850.10549759699917946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5720.10315320595475325No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.10062847713767888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)