FastQCFastQC Report
Wed 8 May 2024
EGAF00007961042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541231
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18230.33682475689677793No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18130.33497711697962607No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7970.14725690139700054No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7520.1389425217698173No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.11621655078884986No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5490.10143543145163525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)