FastQCFastQC Report
Wed 8 May 2024
EGAF00007961043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541231
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41400.764922925700856No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23530.4347496725058247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11070.20453373882870718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7550.13949681374496287No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.1250852223911786No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6040.1115974509959703No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5510.10180495943506562No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5430.10032684750134416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)