FastQCFastQC Report
Wed 8 May 2024
EGAF00007961045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585194
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23020.39337382133104576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15920.27204653499523235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13280.2269332904985355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13270.2267624069966541No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12760.21804734840070128No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12520.21394614435554707No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12250.20933228980474852No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11200.19138952210719865No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10630.18164916249995727No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10030.17139615238707162No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9790.16729494834191738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9750.1666114143343917No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9350.15977607425913457No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9260.15823812274220173No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9100.1555039867120989No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.13790298601831186No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7630.13038411193552907No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7560.12918792742235907No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7480.12782085940730767No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7400.12645379139225624No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7140.12201082034333914No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7030.12013110182264343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6840.1168843152868963No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6680.11415017925679348No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6370.10885279069846922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)