FastQCFastQC Report
Wed 8 May 2024
EGAF00007961047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563353
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27570.48939119876880044No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21350.3789808521477653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15300.27158815165624395No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12440.22082069324207027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12040.21372034940792006No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12030.21354284081206631No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11320.20093973050644975No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11130.19756706718522843No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10860.19277433509717706No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10470.18585149985888066No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9370.1663255543149677No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9210.16348541678130765No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8950.15887019328911No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8550.15176984945495986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8290.14715462596276224No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8040.14271691106641837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7550.13401898986958444No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7510.13330895548616942No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7390.13117885233592436No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7220.12816120620641056No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7070.12549857726860422No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6820.12106086237226037No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6320.11218543257957266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.10899027785420509No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.10863526066249758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)