FastQCFastQC Report
Wed 8 May 2024
EGAF00007961049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences588704
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21890.3718337228896016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16290.2767095178561722No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13660.23203511442082947No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12990.22065418274718704No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12830.21793634831766048No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12650.2148787845844431No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12540.2130102734141436No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12030.20434717617002773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10720.18209490677827908No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10560.17937707234875253No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10010.17003451649725498No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9730.1652783062455835No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9690.16459884763820187No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9130.15508642713485896No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8910.15134940479425993No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8180.13894928520954503No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7850.1333437516986465No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7790.13232456378757404No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7700.13079578192096536No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7520.127738218187748No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7400.12569984236560308No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7070.12009430885470457No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6670.11329972278088819No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6590.11194080556612492No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6310.10718459531445346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)